AddObserver(CGObserver *observer) | votca::csg::CsgApplication | inline |
AddProgramOptions(const std::string &group="") | votca::tools::Application | |
Application() | votca::tools::Application | |
BeginEvaluate(Topology *top, Topology *) override | CGOrderParam | inlinevirtual |
boxl | CGOrderParam | protected |
CheckRequired(const std::string &option_name, const std::string &error_msg="") | votca::tools::Application | |
continue_execution_ | votca::tools::Application | protected |
CsgApplication()=default | votca::csg::CsgApplication | |
do_mapping_ | votca::csg::CsgApplication | protected |
DoMapping() override | CGOrderParam | inlinevirtual |
DoMappingDefault(void) | votca::csg::CsgApplication | inlinevirtual |
DoThreaded(void) | votca::csg::CsgApplication | inlinevirtual |
DoTrajectory() override | CGOrderParam | inlinevirtual |
EndEvaluate() override | CGOrderParam | inlinevirtual |
EvalConfiguration(Topology *conf, Topology *=nullptr) override | CGOrderParam | inlinevirtual |
EvaluateOptions() override | CGOrderParam | inlinevirtual |
EvaluateTopology(Topology *, Topology *=nullptr) | votca::csg::CsgApplication | inlinevirtual |
Exec(int argc, char **argv) | votca::tools::Application | |
file_ | CGOrderParam | protected |
file_u_ | CGOrderParam | protected |
file_v_ | CGOrderParam | protected |
file_w_ | CGOrderParam | protected |
filename_ | CGOrderParam | protected |
filter_ | CGOrderParam | protected |
ForkWorker(void) | votca::csg::CsgApplication | virtual |
HelpText(ostream &out) override | CGOrderParam | inlinevirtual |
hist_u_ | CGOrderParam | protected |
hist_v_ | CGOrderParam | protected |
hist_w_ | CGOrderParam | protected |
Initialize() override | CGOrderParam | inlinevirtual |
is_first_frame_ | votca::csg::CsgApplication | protected |
MergeWorker(Worker *worker) | votca::csg::CsgApplication | virtual |
minrad_ | CGOrderParam | protected |
myWorkers_ | votca::csg::CsgApplication | protected |
n_ | CGOrderParam | protected |
nbin_ | CGOrderParam | protected |
NeedsTopology(void) | votca::csg::CsgApplication | inlinevirtual |
nframes_ | votca::csg::CsgApplication | protected |
nframesMutex_ | votca::csg::CsgApplication | protected |
nmol_ | CGOrderParam | protected |
nthreads_ | votca::csg::CsgApplication | protected |
observers_ | votca::csg::CsgApplication | protected |
op_desc_ | votca::tools::Application | private |
op_groups_ | votca::tools::Application | protected |
op_vm_ | votca::tools::Application | private |
OptionsDesc() | votca::tools::Application | inline |
OptionsMap() | votca::tools::Application | inline |
ParseCommandLine(int argc, char **argv) | votca::tools::Application | private |
ProcessData(Worker *worker) | votca::csg::CsgApplication | |
ProgramName() override | CGOrderParam | inlinevirtual |
radialcutoff_ | CGOrderParam | protected |
rbins_ | CGOrderParam | protected |
rbinw_ | CGOrderParam | protected |
ref_ | CGOrderParam | protected |
refmol_ | CGOrderParam | protected |
Run(void) override | votca::csg::CsgApplication | virtual |
setFilter(const string &filter) | CGOrderParam | inline |
setOut(const string &filename) | CGOrderParam | inline |
ShowHelpText(std::ostream &out) override | votca::csg::CsgApplication | virtual |
StopExecution() | votca::tools::Application | inline |
SynchronizeThreads(void) | votca::csg::CsgApplication | inlinevirtual |
threadsMutexesIn_ | votca::csg::CsgApplication | protected |
threadsMutexesOut_ | votca::csg::CsgApplication | protected |
traj_reader_ | votca::csg::CsgApplication | protected |
traj_readerMutex_ | votca::csg::CsgApplication | protected |
VersionString() | votca::tools::Application | inlinevirtual |
visible_options_ | votca::tools::Application | private |
VisibleOptions() | votca::tools::Application | inline |
~Application() | votca::tools::Application | virtual |
~CsgApplication() override=default | votca::csg::CsgApplication | |