votca::csg::Topology Member List

This is the complete list of members for votca::csg::Topology, including all inherited members.

AddBondedInteraction(Interaction *ic)	votca::csg::Topology
autoDetectBoxType(const Eigen::Matrix3d &box) const	votca::csg::Topology	protected
bc_	votca::csg::Topology	protected
BCShortestConnection(const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const	votca::csg::Topology
BeadCount() const	votca::csg::Topology	inline
Beads()	votca::csg::Topology	inline
beads_	votca::csg::Topology	protected
BeadTypeExist(std::string type) const	votca::csg::Topology
beadtypes_	votca::csg::Topology	protected
BondedInteractions()	votca::csg::Topology	inline
BondedInteractions() const	votca::csg::Topology	inline
BoxVolume() const	votca::csg::Topology
CheckMoleculeNaming(void)	votca::csg::Topology
Cleanup()	votca::csg::Topology
ClearMoleculeList()	votca::csg::Topology	inline
CopyTopologyData(Topology *top)	votca::csg::Topology
CreateBead(Bead::Symmetry symmetry, std::string name, std::string type, Index resnr, double m, double q)	votca::csg::Topology	inline
CreateMolecule(std::string name)	votca::csg::Topology	inline
CreateMoleculesByRange(std::string name, Index first, Index nbeads, Index nmolecules)	votca::csg::Topology
CreateResidue(std::string name)	votca::csg::Topology	inline
CreateResidue(std::string name, Index id)	votca::csg::Topology	inline
exclusions_	votca::csg::Topology	protected
getBead(const Index i)	votca::csg::Topology	inline
getBead(const Index i) const	votca::csg::Topology	inline
getBeadTypeId(std::string type) const	votca::csg::Topology
getBoundary() const	votca::csg::Topology	inline
getBox() const	votca::csg::Topology	inline
getBoxType() const	votca::csg::Topology	inline
getDist(Index bead1, Index bead2) const	votca::csg::Topology
getExclusions()	votca::csg::Topology	inline
getExclusions() const	votca::csg::Topology	inline
getMolecule(const Index i)	votca::csg::Topology	inline
getMolecule(const Index i) const	votca::csg::Topology	inline
getParticleGroup() const	votca::csg::Topology	inline
getResidue(const Index i)	votca::csg::Topology	inline
getResidue(const Index i) const	votca::csg::Topology	inline
getStep() const	votca::csg::Topology	inline
getTime() const	votca::csg::Topology	inline
has_force_	votca::csg::Topology	protected
has_vel_	votca::csg::Topology	protected
HasForce()	votca::csg::Topology	inline
HasVel()	votca::csg::Topology	inline
InsertExclusion(Bead *bead1, iteratable &l)	votca::csg::Topology	inline
interaction_groups_	votca::csg::Topology	protected
interactions_	votca::csg::Topology	protected
interactions_by_group_	votca::csg::Topology	protected
InteractionsInGroup(const std::string &group)	votca::csg::Topology
MoleculeByIndex(Index index)	votca::csg::Topology	inline
MoleculeCount() const	votca::csg::Topology	inline
Molecules()	votca::csg::Topology	inline
Molecules() const	votca::csg::Topology	inline
molecules_	votca::csg::Topology	protected
particle_group_	votca::csg::Topology	protected
RebuildExclusions()	votca::csg::Topology
RegisterBeadType(std::string type)	votca::csg::Topology
RenameBeadType(std::string name, std::string newname)	votca::csg::Topology
RenameMolecules(std::string range, std::string name)	votca::csg::Topology
ResidueCount() const	votca::csg::Topology	inline
Residues()	votca::csg::Topology	inline
Residues() const	votca::csg::Topology	inline
residues_	votca::csg::Topology	protected
SetBeadTypeMass(std::string name, double value)	votca::csg::Topology
setBox(const Eigen::Matrix3d &box, BoundaryCondition::eBoxtype boxtype=BoundaryCondition::typeAuto)	votca::csg::Topology	inline
SetHasForce(const bool v)	votca::csg::Topology	inline
SetHasVel(const bool v)	votca::csg::Topology	inline
setParticleGroup(std::string particle_group)	votca::csg::Topology	inline
setStep(Index s)	votca::csg::Topology	inline
setTime(double t)	votca::csg::Topology	inline
ShortestBoxSize() const	votca::csg::Topology
step_	votca::csg::Topology	protected
time_	votca::csg::Topology	protected
Topology()	votca::csg::Topology	inline
~Topology()	votca::csg::Topology