Inheritance diagram for CsgMapApp:

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Collaboration diagram for CsgMapApp:

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Public Member Functions
string	ProgramName () override
	program name
void	HelpText (ostream &out) override
	help text of application without version information
bool	DoTrajectory () override
	overload and return true to enable trajectory command line options
bool	DoMapping () override
	overload and return true to enable mapping command line options
void	Initialize () override
	Initialize application data.
bool	EvaluateOptions () override
	Process command line options.
void	BeginEvaluate (Topology top, Topology top_ref) override
	called before the first frame
void	EvalConfiguration (Topology top, Topology top_ref) override
void	EndEvaluate () override
	called after the last frame
Public Member Functions inherited from votca::csg::CsgApplication
	CsgApplication ()=default
	~CsgApplication () override=default
void	Run (void) override
	Main body of application.
void	ShowHelpText (std::ostream &out) override
virtual bool	DoMappingDefault (void)
	if DoMapping is true, will by default require mapping or not
virtual bool	DoThreaded (void)
virtual bool	SynchronizeThreads (void)
virtual bool	NeedsTopology (void)
	if topology is always needed
virtual bool	EvaluateTopology (Topology , Topology =nullptr)
	called after topology was loaded
void	AddObserver (CGObserver *observer)
bool	ProcessData (Worker *worker)
	Gets frames from TrajectoryReader in an ordered way and, if successful, calls Worker::EvalConfiguration for that frame.
virtual std::unique_ptr< Worker >	ForkWorker (void)
virtual void	MergeWorker (Worker *worker)
Public Member Functions inherited from votca::tools::Application
	Application ()
virtual	~Application ()
int	Exec (int argc, char **argv)
	executes the program
virtual std::string	VersionString ()
	version string of application
void	CheckRequired (const std::string &option_name, const std::string &error_msg="")
	Check weather required option is set.
boost::program_options::options_description_easy_init	AddProgramOptions (const std::string &group="")
	add option for command line
boost::program_options::variables_map &	OptionsMap ()
	get available program options & descriptions
boost::program_options::options_description &	OptionsDesc ()
boost::program_options::options_description &	VisibleOptions ()
	filters out the Hidden group from the options descriptions
void	StopExecution ()
	call StopExecution after EvaluateOptions

Protected Attributes
std::unique_ptr< TrajectoryWriter >	writer_
bool	do_hybrid_
bool	do_vel_
bool	do_force_
Protected Attributes inherited from votca::csg::CsgApplication
std::list< CGObserver * >	observers_
bool	do_mapping_
std::vector< std::unique_ptr< Worker > >	myWorkers_
Index	nframes_
bool	is_first_frame_
Index	nthreads_
tools::Mutex	nframesMutex_
tools::Mutex	traj_readerMutex_
std::vector< std::unique_ptr< tools::Mutex > >	threadsMutexesIn_
	stores Mutexes used to impose order for input
std::vector< std::unique_ptr< tools::Mutex > >	threadsMutexesOut_
	stores Mutexes used to impose order for output
std::unique_ptr< TrajectoryReader >	traj_reader_
Protected Attributes inherited from votca::tools::Application
std::map< std::string, boost::program_options::options_description >	op_groups_
bool	continue_execution_ = true

Detailed Description

Definition at line 32 of file csg_map.cc.

Member Function Documentation

◆ BeginEvaluate()

void CsgMapApp::BeginEvaluate	(	Topology *	top,
		Topology *	top_ref )

overridevirtual

called before the first frame

Reimplemented from votca::csg::CsgApplication.

Definition at line 171 of file csg_map.cc.

◆ DoMapping()

bool CsgMapApp::DoMapping ( void )

inlineoverridevirtual

overload and return true to enable mapping command line options

Reimplemented from votca::csg::CsgApplication.

Definition at line 55 of file csg_map.cc.

◆ DoTrajectory()

bool CsgMapApp::DoTrajectory ( void )

inlineoverridevirtual

overload and return true to enable trajectory command line options

Reimplemented from votca::csg::CsgApplication.

Definition at line 54 of file csg_map.cc.

◆ EndEvaluate()

void CsgMapApp::EndEvaluate ( )

inlineoverridevirtual

called after the last frame

Reimplemented from votca::csg::CsgApplication.

Definition at line 162 of file csg_map.cc.

◆ EvalConfiguration()

void CsgMapApp::EvalConfiguration	(	Topology *	top,
		Topology *	top_ref )

inlineoverridevirtual

Reimplemented from votca::csg::CsgApplication.

Definition at line 84 of file csg_map.cc.

◆ EvaluateOptions()

bool CsgMapApp::EvaluateOptions ( )

inlineoverridevirtual

Process command line options.

Returns: true to continue, false to stop

EvaluateOptions is called by Run after parsing the command line. return true if everything is ok, false to stop and show help text.

Reimplemented from votca::csg::CsgApplication.

Definition at line 76 of file csg_map.cc.

◆ HelpText()

void CsgMapApp::HelpText ( ostream & out )

inlineoverridevirtual

help text of application without version information

Parameters

out	ostream for output

Implements votca::tools::Application.

Definition at line 35 of file csg_map.cc.

◆ Initialize()

void CsgMapApp::Initialize ( )

inlineoverridevirtual

Initialize application data.

Initialize is called by run before parsing the command line. All necessary command line arguments can be added here

Reimplemented from votca::csg::CsgApplication.

Definition at line 57 of file csg_map.cc.

◆ ProgramName()

string CsgMapApp::ProgramName ( )

inlineoverridevirtual

program name

Returns: string with program name

overload this function to set the program name

Implements votca::tools::Application.

Definition at line 34 of file csg_map.cc.

Member Data Documentation

◆ do_force_

bool CsgMapApp::do_force_

protected

Definition at line 168 of file csg_map.cc.

◆ do_hybrid_

bool CsgMapApp::do_hybrid_

protected

Definition at line 166 of file csg_map.cc.

◆ do_vel_

bool CsgMapApp::do_vel_

protected

Definition at line 167 of file csg_map.cc.

◆ writer_

std::unique_ptr<TrajectoryWriter> CsgMapApp::writer_

protected

Definition at line 165 of file csg_map.cc.

The documentation for this class was generated from the following file:

csg/src/tools/csg_map.cc

Public Member Functions

Protected Attributes

Detailed Description

Member Function Documentation

◆ BeginEvaluate()

◆ DoMapping()

◆ DoTrajectory()

◆ EndEvaluate()

◆ EvalConfiguration()

◆ EvaluateOptions()

◆ HelpText()

◆ Initialize()

◆ ProgramName()

Member Data Documentation

◆ do_force_

◆ do_hybrid_

◆ do_vel_

◆ writer_