#include <graph.h>

Inheritance diagram for votca::tools::Graph:

Collaboration diagram for votca::tools::Graph:

[legend]

Public Member Functions
	Graph ()

virtual	~Graph ()=default

	Graph (std::vector< Edge > edges, std::unordered_map< Index, GraphNode > nodes)

bool	operator!= (const Graph &graph) const

bool	operator== (const Graph &graph) const

std::vector< std::pair< Index, GraphNode > >	getIsolatedNodes (void) const

std::vector< std::pair< Index, GraphNode > >	getNeighNodes (Index vertex) const

void	setNode (Index vertex, GraphNode &graph_node)
	set the Node associated with vertex 'vert'

void	setNode (std::pair< Index, GraphNode > &id_and_node)

std::vector< Index >	getJunctions () const
	Gets all vertices with degree of 3 or greater.

GraphNode	getNode (const Index vertex) const
	Return a copy of the graph node at vertex 'vert'.

virtual std::vector< std::pair< Index, GraphNode > >	getNodes () const
	Return all the vertices and their graph nodes that are within the graph.

std::vector< Index >	getNeighVertices (Index vertex) const

std::string	getId () const
	Returns the id of graph.

virtual std::vector< Edge >	getEdges ()
	Returns all the edges in the graph.

std::vector< Edge >	getNeighEdges (Index vertex) const
	Returns all the edges in the graph connected to vertex `vertex`

std::vector< Index >	getVertices () const
	Returns all the vertices in the graph.

Index	getMaxDegree () const
	Finds the max degree of a vertex in the graph.

Index	getDegree (Index vertex) const
	Calcualtes the degree, or number of edges connected to vertex `vertex`

virtual std::vector< Index >	getVerticesDegree (Index degree) const
	Returns all the vertices with degree specified by `degree`

bool	vertexExist (Index vertex) const
	Determines if a vertex exists within the graph.

virtual bool	edgeExist (const Edge &edge) const
	Determines if an edge is stored in the graph.

void	clearNodes ()
	Remove contents of all nodes.

void	copyNodes (Graph &graph)

Protected Member Functions
void	calcId_ ()
	Calculate the id of the graph.

Protected Attributes
EdgeContainer	edge_container_

std::unordered_map< Index, GraphNode >	nodes_

std::string	id_

Friends
std::ostream &	operator<< (std::ostream &os, const Graph graph)

Detailed Description

Definition at line 43 of file graph.h.

Constructor & Destructor Documentation

◆ Graph() [1/2]

votca::tools::Graph::Graph ( )

inline

Definition at line 58 of file graph.h.

◆ ~Graph()

virtual votca::tools::Graph::~Graph ( )

virtualdefault

◆ Graph() [2/2]

votca::tools::Graph::Graph	(	std::vector< Edge >	edges,
		std::unordered_map< Index, GraphNode >	nodes )

Constructor

Parameters

edges	- vector of edges where each edge is composed of two s (vertex ids) describing a link between the vertices
nodes	- unordered_map where the key is the vertex id and the target is the graph node

Definition at line 45 of file graph.cc.

Member Function Documentation

◆ calcId_()

void votca::tools::Graph::calcId_ ( )

protected

Calculate the id of the graph.

Definition at line 129 of file graph.cc.

◆ clearNodes()

void votca::tools::Graph::clearNodes ( )

Remove contents of all nodes.

Definition at line 120 of file graph.cc.

◆ copyNodes()

void votca::tools::Graph::copyNodes ( Graph & graph )

Copies nodes from one graph to another. This should only be used in cases where the graph does not contain nodes before the copy.

Definition at line 122 of file graph.cc.

◆ edgeExist()

virtual bool votca::tools::Graph::edgeExist ( const Edge & edge ) const

inlinevirtual

Determines if an edge is stored in the graph.

Definition at line 132 of file graph.h.

◆ getDegree()

Index votca::tools::Graph::getDegree ( Index vertex ) const

Calcualtes the degree, or number of edges connected to vertex vertex

Definition at line 140 of file graph.cc.

◆ getEdges()

virtual std::vector< Edge > votca::tools::Graph::getEdges ( )

inlinevirtual

Returns all the edges in the graph.

Definition at line 103 of file graph.h.

◆ getId()

std::string votca::tools::Graph::getId ( ) const

inline

Returns the id of graph.

Definition at line 100 of file graph.h.

◆ getIsolatedNodes()

vector< pair< Index, GraphNode > > votca::tools::Graph::getIsolatedNodes ( void ) const

Find all the vertices that are isolated (not connected to any other vertex) and return them in a vector with their corresponding graph node.

Definition at line 65 of file graph.cc.

◆ getJunctions()

vector< Index > votca::tools::Graph::getJunctions ( ) const

Gets all vertices with degree of 3 or greater.

Definition at line 110 of file graph.cc.

◆ getMaxDegree()

Index votca::tools::Graph::getMaxDegree ( ) const

inline

Finds the max degree of a vertex in the graph.

Will look at each of the vertices and find the vertex with the most edges connected to it. It will count the number of edges this corresponds to the maximum degree of the graph.

Definition at line 120 of file graph.h.

◆ getNeighEdges()

std::vector< Edge > votca::tools::Graph::getNeighEdges ( Index vertex ) const

inline

Returns all the edges in the graph connected to vertex vertex

Definition at line 106 of file graph.h.

◆ getNeighNodes()

vector< pair< Index, GraphNode > > votca::tools::Graph::getNeighNodes ( Index vertex ) const

Returns a vector of the vertices and their graph nodes that are directly connected to the vertex 'vert'

Definition at line 76 of file graph.cc.

◆ getNeighVertices()

std::vector< Index > votca::tools::Graph::getNeighVertices ( Index vertex ) const

inline

Returns all the vertices of the graph connected to vertex vert through an edge.

Definition at line 95 of file graph.h.

◆ getNode()

GraphNode votca::tools::Graph::getNode ( const Index vertex ) const

Return a copy of the graph node at vertex 'vert'.

Definition at line 97 of file graph.cc.

◆ getNodes()

vector< pair< Index, GraphNode > > votca::tools::Graph::getNodes ( void ) const

virtual

Return all the vertices and their graph nodes that are within the graph.

Reimplemented in votca::tools::ReducedGraph.

Definition at line 102 of file graph.cc.

◆ getVertices()

vector< Index > votca::tools::Graph::getVertices ( ) const

Returns all the vertices in the graph.

Definition at line 166 of file graph.cc.

◆ getVerticesDegree()

vector< Index > votca::tools::Graph::getVerticesDegree ( Index degree ) const

virtual

Returns all the vertices with degree specified by degree

Reimplemented in votca::tools::ReducedGraph.

Definition at line 162 of file graph.cc.

◆ operator!=()

bool votca::tools::Graph::operator!= ( const Graph & graph ) const

Equivalence and non equivalence operators work by determine if the contents of each graph node in each of the graphs are the same.

Definition at line 59 of file graph.cc.

◆ operator==()

bool votca::tools::Graph::operator== ( const Graph & graph ) const

Definition at line 63 of file graph.cc.

◆ setNode() [1/2]

void votca::tools::Graph::setNode	(	Index	vertex,
		GraphNode &	graph_node )

set the Node associated with vertex 'vert'

Definition at line 87 of file graph.cc.

◆ setNode() [2/2]

void votca::tools::Graph::setNode ( std::pair< Index, GraphNode > & id_and_node )

Definition at line 93 of file graph.cc.

◆ vertexExist()

bool votca::tools::Graph::vertexExist ( Index vertex ) const

Determines if a vertex exists within the graph.

Definition at line 152 of file graph.cc.

Friends And Related Symbol Documentation

◆ operator<<

std::ostream & operator<<	(	std::ostream &	os,
		const Graph	graph )

friend

Definition at line 170 of file graph.cc.

Member Data Documentation

◆ edge_container_

EdgeContainer votca::tools::Graph::edge_container_

protected

Definition at line 45 of file graph.h.

◆ id_

std::string votca::tools::Graph::id_

protected

This is the id of the graph to graphs that contain the same content are considered equal

Definition at line 51 of file graph.h.

◆ nodes_

std::unordered_map<Index, GraphNode> votca::tools::Graph::nodes_

protected

Definition at line 47 of file graph.h.

The documentation for this class was generated from the following files:

tools/include/votca/tools/graph.h
tools/src/libtools/graph.cc

Public Member Functions

Protected Member Functions

Protected Attributes

Friends

Detailed Description

Constructor & Destructor Documentation

◆ Graph() [1/2]

◆ ~Graph()

◆ Graph() [2/2]

Member Function Documentation

◆ calcId_()

◆ clearNodes()

◆ copyNodes()

◆ edgeExist()

◆ getDegree()

◆ getEdges()

◆ getId()

◆ getIsolatedNodes()

◆ getJunctions()

◆ getMaxDegree()

◆ getNeighEdges()

◆ getNeighNodes()

◆ getNeighVertices()

◆ getNode()

◆ getNodes()

◆ getVertices()

◆ getVerticesDegree()

◆ operator!=()

◆ operator==()

◆ setNode() [1/2]

◆ setNode() [2/2]

◆ vertexExist()

Friends And Related Symbol Documentation

◆ operator<<

Member Data Documentation

◆ edge_container_

◆ id_

◆ nodes_